Cardoso-Moreira M.^¶, Velten B., Mort M., Cooper D. N., Huber W. and Kaessmann H.^¶ Developmental gene expression differences between humans and mammalian models. bioRxiv

Wang Z.Y., Leushkin E., Liechti A., Ovchinnikova S., Mößinger K., Brüning T., Rummel C., Grützner F., Cardoso-Moreira M., Janich P., Gatfield D., Diagouraga B., de Massy B., Gill M.E., Peters A.H.F.M., Anders S., and Kaessmann H. Transcriptome and translatome co-evolution in mammals. Nature (in press)

Cardoso-Moreira M.^¶, Halbert J., Valloton D., Velten B., Chen C., Shao Y., Liechti A., Ascencao K., Rummel C., Ovshinnikova S., Mazin P. V., Xenarios I., Harshman K., Mort M., Cooper D. N., Sandi C., Soares M., Ferreira P. G., Afonso S., Carneiro M., Turner J. A., VandeBerg J. L., Fallashahroudi A., Jensen P., Behr R., Lisgo S., Lindsay S., Khaitovich P., Huber W., Baker J. C., Anders S., Zhang Y. E. and Kaessmann H.^¶ Gene expression across mammalian organ development. Nature 26-06-2019.

Sarropoulos I., Marin R., Cardoso-Moreira M.*^¶ and Kaessmann H.*^¶ Developmental dynamics of lncRNAs across mammalian organs and species. Nature 26-06-2019.

Hannibal R. L., Cardoso-Moreira M., Chetty S. P., Lau J., Qi Z, Gonzalez-Maldonado E., Cherry A. M., Yu J, Norton M. E., Baker J. C. Investigating human placentation and pregnancy using first trimester chorionic villi. Placenta 65:65-75.

Early A. M., Arguello J. R., Cardoso-Moreira M., Gottipati S., Grenier J. K. and Clark A. G. Survey of global genetic diversity within the Drosophila immune system. Genetics 205:353-366.

Tan S., Cardoso-Moreira M., Shi W., Zhang D., Huang J., Mao Y., Jia H., Zhang Y., Chen C., Shao Y., Leng L., Liu Z., Huang X., Long M. and Zhang Y. E. LTR-mediated retroposition as a mechanism of RNA-based duplication in metazoans. Genome Research 26:1663-1675.

Cardoso-Moreira M.^¶, Arguello J. R., Gottipati S., Harshman L. G., Grenier J. K. and Clark A. G. Evidence for the fixation of gene duplications by positive selection in Drosophila. Genome research 26:787-798.

Arguello J. R., Cardoso-Moreira M., Mohammed J., Grenier J. K., Gottipati S., Clark A. G. and Benton R. Extensive local adaptation within the chemosensory system following D. melanogaster’s global expansion. Nature communications 7:11855.

Grenier J. K., Arguello J. R., Cardoso-Moreira M., Gottipati S., Mohammed J., Hackett S. R., Boughton R., Greenberg A. J. and Clark A. G. Global Diversity Lines - A five-continent reference panel of sequenced Drosophila melanogaster strains. G3 5 (4), 593-603.

Covered in Genes to Genomes (Genetics Society of America).

Cardoso-Moreira M.^¶, Arguello J. R. and Clark A.G. Mutation spectrum of Drosophila CNVs revealed by breakpoint sequencing. Genome Biology 13:R119.

Cardoso-Moreira M.^¶ and Long M. The origin and evolution of new genes. Evolutionary genomics: statistical and computational methods Springer (Humana).

Cardoso-Moreira M.^¶, Emerson J.J., Clark A.G. and Long M. Drosophila duplication hotspots are associated with late-replicating regions of the genome. PLoS Genetics 7:e1002340.

Cardoso-Moreira M.^¶ and Long M. Mutational bias shaping fly copy number variation: implications for genome evolution. Trends in Genetics 26:243-247.

Emerson J.J.*^¶, Cardoso-Moreira M.*^¶, Borevitz J. and Long M. Natural selection shapes genome-wide patterns of copy number polymorphism in Drosophila melanogaster. Science 320:1629-1631.